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How to Reconcile QuickBooks Online with New Clio Payments Processing Fees


  • Reconciling Processing Fees in QuickBooks Online


  • Clio Manage
  • Clio Payments
  • QuickBooks Online

Additional Information:

  • Running the Deposit Report will assist in matching up payments and processing fees in QuickBooks Online
  • For steps on how to record a Merchant Service Fee in QuickBooks Online, please review this article from Step #6 onwards. 
  • If you would like to see this as a feature, please contact to request it.


You will have to write off the processing fee amounts in QuickBooks Online.

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